INDEX
Activation Loop
Active site
Adaptive crossover probability
Adaptive mutation probability
Adjacency matrix
ADMET
Affinity purification
Alignment Kernel
All Pair Sum Kernel
Angle bending energy
Ant Colony Optimization (ACO)
Approximate subgraph
Argonaute
Artificial Immune Systems
ASA
Association density
Attributed Pointsets
Bacterial Foraging Optimization Algorithm (BFOA)
Bayes classifier
Bayesian Network
Bees Foraging Algorithm
Belief Networks
Betweenness centrality
Bhattacharya distance
Binding DB
Biological significance test
BLAST
Bond stretching energy
Cambridge Structural Database (CSD)
Cancer classification
CFP
Chaos Theory
Chembank
Chromosome
Class separability
Classification accuracy
Classifiers
Clique
Cluster Profile Plot
Clustering coefficient
Clustering
Cmalign
Cmbuild
Cmsearch
Complexity analysis
Computation time
Conformational entropy
Conformational plasticity
ConQuest
Core clustering coefficient
Covariance model (CM)
Cross comparison
Crossover
Cyclin dependant kinase (CDK)
Czekanowski-Dice (CD) distance
Cα-Cα deviation
Databases
EPD
Promec DB
Regulon DB
Data fusion
Data sets
Drosophila
E.coli
Decision tree classifier
Degree distribution
Degree
Dense k-subnetwork
DIANA-microT
Differential Evolution (DE)
Differential Evolution based Fuzzy Clustering
Direct Alignment Kernel
Discriminant analysis
Disease genes
Distance Matrix
Divergence function
Double-stranded region
Eisen Plot
Electrostatic interaction energy
Elitism
ERK
Error probability
Evolutionary Algorithms
Evolutionary conservation
FatiGO
Features
cross-correlation
encoding
k-mers
n-grams
physical
Feature extraction
expectation and maximization
genetic algorithm
global signal based methods
hidden Markov model
local signal based methods
position weight matrix
Filter and wrapper approach
Fitness function
FlyBase
Free energy
Frequent subgraph mining
FRET
Full alignment in Rfam
Fuzzy clustering
Fuzzy C-Means
Fuzzy Sets
Gene Expression Data Sets
Gene expression
Gene marker
Gene ontology (GO)
Gene prioritization
Genetic algorithm (GA)
Genetic Algorithm based Fuzzy Clustering
GLEAN-UTR DB
Granular computing
Graph alignment
Graph database
Graph mining
Graph representation
Graph similarity
α C helix
Hidden Markov Model (HMM)
Histone 3′-UTR stem-loop (HSL3)
H-NMR
Homolog
Homologous RNA
Homology
Human protein reference database (HPRD)
Hybrid Systems
Hydrogen bonding
I index
Infernal
Insight II
Insulin Receptor kinase (IRK)
Inter molecular interaction energy
Intra molecular energy
Iron response element (IRE)
JM distance
k-block
k-core
KEGG pathways
kernel function
Kernel Methods
K-Means clustering
k-NN classifier
Kolmogorov distance
k-plex
Lead molecule
Ligand design
Linear kernel
Linear regression
Lipinski rule of five
Mahalanobis distance
Majority voting ensemble
Marginalized kernel
Matching kernel
MEDLINE
messenger RNA (mRNA)
microarray
microarray data set
microRNA
microRNAdb
MicroTar
miRanda
miRBase
Mirecords
miRNA
miRNAMAP
miTarget
Mitogen Activated Protein kinase (MAPK)
Multiobjective feature selection
Multiobjective genetic algorithm
Multiple sequence alignment
MUSTANG
Mutation
MXSCARNA
Naïve Bayesian
n-clan
ncRNA
ncRNA
Neighborhood Pair Sum Kernel
Neural network classifier
Neural Networks
non-coding RNA (ncRNA)
noncoding RNA
NSGA-II
oncogene
Optimal assignment kernel
Optimization
Optimization
Pairwise Distance Kernel
ParPSBKM clustering
Particle Swarm Optimization (PSO)
Pathway
Pattern diffusion
Pattern recognition
Consensus
motif
PB score
PDB
Performance measures
accuracy
positive predictive value (PPV)
precision
sensitivity
specificity
Permutation Sum Kernel
Phenotype
PI
PicTar
PITA
Point symmetry-based distance
Point-Symmetry
polynomial kernel
PPI–330
pre-miRNA
pri-miRNA
Promoter
binding sites
eukaryote
hexamer
prokaryote
TATA box
Prostate cancer
Protein blocks (PB)
Protein kinase A (PKA)
Protein-protein interactions
Proximity measure
PSTAIRE
PubChem
p-Values
PyMol
γ-quasi-biclique
γ-quasi-clique
γ-quasi-complete network
Qualitative structure-activity relationship
(QSAR)
Quantitative Structure Activity Relationship (QSAR)
RADAR
Radial basis function (RBF)
Random forests
Representative Residue Kernel
Rfam database
Rfam
RIP
RmotifDB
RNA motif database
RNA secondary structure
RNA structural motif
RNA structure database
RNA
RNA22
RNAhybrid
RNAz
Root Mean Square Deviation (RMSD)
Rough Sets
roX1
RSA
RSmatch
Scalability
Scale-free property
Scoring function
Secondary structure
Seed alignment in Rfam
Sequence conservation
Sequence neighborhood
Sigmoidal kernel
Signal-to-noise ratio (SNR)
Signal processing
Fourier transform (FT)
wavelet transform
Silhouette
Simulated Annealing based Fuzzy Clustering
Single-stranded region
Smith–Waterman algorithm
Soft computing
Spectral Neighborhood Kernel
Spectral Projection Vector
Stochastic context-free grammar
Stockholm format
Structural Alignment
Structure Neighborhood
Structure-based search engine
Structured Data
Superposition
Support vector machine (SVM)
SVM
Symmetry
Symmetry-based distance
Syntactic approach
Systems biology
TarBase
TargetScan
Template matching
Time complexity
Timing analysis
Torsional energy
transcripts
tumor suppressor gene
Type 2 Fuzzy Sets
Validity analysis
Van der Waals energy
Vienna RNA package
Vienna RNA secondary structure library
Vienna style dot bracket format
Wavelet analysis
Web server
Whole genome analysis
Wilcoxon’s rank sum test
X-ray crystallography
Yeast two-hybrid system