List of Figures

1.1

A simulation of Brownian motion

3.1

The source of a minimal Rnw document

3.2

A minimal example in Image

3.3

The source of a minimal Rmd document

3.4

A minimal example in Markdown

4.1

Edit an Rnw document in RStudio

4.2

Edit an Rmd document in RStudio

4.3

Using knitr in LYX

5.1

The Sweave style in knitr

5.2

The listings style in knitr

7.1

A plot created in ggplot2 that does not need to be printed explicitly

7.2

A plot using the Bookman font family

7.3

A table of the Windows-1250 code page

7.4

Three expressions produced two plots

7.5

All high-level plots are captured

7.6

Show plots right below the code

7.7

Only the last plot was kept

7.8

A clock animation

7.9

A right-aligned plot adapted from ?stars

7.10

Rotate two plots with different angles

7.11

The traditional approach to writing math expressions in plots

7.12

Write math in native Image with the tikz() device

7.13

A figure environment with sub-figures

10.1

A plot with the default margin

10.2

A plot with a smaller margin

10.3

The original plot with a large white margin

10.4

The cropped plot

10.5

An rgl plot captured by hook_rgl()

10.6

A plot created by GGobi

10.7

Adding elements to an existing rgl plot

11.1

A diagram drawn with TikZ

11.2

A diagram drawn with dot in Graphviz

12.1

A table created by the gridExtra package

12.2

Break long lines with listings

12.3

A simple example of using knitr in beamer slides

12.4

A sample page of beamer slides

12.5

R code chunks in the R Example environments

12.6

The Docco style for HTML output

12.7

The source document of the ggplot2 geom examples

12.8

A sample page of the ggplot2 documentation

12.9

The flowchart demo in the diagram package

12.10

A sample page of the flowchart demo

12.11

A template of regression models

13.1

OpenDocument Text converted from Markdown

13.2

The source of an example of HTML5 slides

14.1

A preview of the HTML output document from R Mark-down v2

14.2

A preview of the table, footnotes, and citations

14.3

A preview of the “readable” theme, with a table of contents and numbered sections

14.4

A preview of the PDF output document from R Mark-down v2

14.5

A preview of the PDF output document, with a table of contents and numbered sections

14.6

A preview of the Microsoft Word document from R Mark-down v2

14.7

Open the styles panel in Word

14.8

Modify styles of elements in Word

14.9

The title slide of an ioslides presentation

14.10

One slide from a Slidy presentation

14.11

Two slides from the Beamer presentation created by R Markdown

14.12

An example page using the Tufte handout style

14.13

A simple interactive document using R Markdown and Shiny

14.14

Create a new R Markdown document from templates

14.15

Create an E-book from R Markdown

14.16

A table created by the DataTables library in R Mark-down

15.1

Trace of Gibbs sampling for a bivariate Normal distribution

15.2

5000 points from Gibbs sampling

15.3

The layout of an R Markdown document and its output in the RStudio Viewer

15.4

A Makefile example for the function make() in servr

15.5

The metadata of a knitr vignette

15.6

A sample page of the ggplot2 transition guide

15.7

The Makefile to compile PDF vignettes using knitr

15.8

The Makefile to compile HTML vignettes

16.1

A screenshot of IPython

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